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ProductData & Analytics/ Data Analysis

AtlasAlign

Align brain microscopy to an atlas, review and export ROIs

Type
Product
Domain
Data & Analytics
Subdomain
Data Analysis
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Availability

available

Pricing approach

Not specified

Location

Not specified

Supporting details

Live on AGMAN

About

AtlasAlign is an open-source Fiji/ImageJ2 plugin for mouse brain atlas alignment and ROI export. Beta.3 adds multichannel and composite viewing, registration pinned to C/Z/T, selected-plane exports, and saved review sessions. Refine alignment, edit anatomical ROIs, and export crops and masks in original image coordinates. Resume individual or batch reviews. Source images stay read-only; researchers review and accept the anatomy. Demo frames show the earlier interface.

What it helps you do

AtlasAlign is an open-source Fiji/ImageJ2 plugin for mouse brain atlas
Demo frames show the earlier interface.
Refine alignment, edit anatomical ROIs, and export crops and masks in original
research
Resume individual or batch reviews.
Source images stay read-only; researchers review and accept the anatomy.
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